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Lin Senjie, Wang Lu, Zheng Lianming, Dong Yunwei, Liu Shufang, Ding Shaoxiong, Ye Naihao, Cao Wenqing, Zhuang Zhimeng. Current status and future prospect of DNA barcoding in marine biology[J]. Haiyang Xuebao, 2014, 36(12): 1-17. doi: 10.3969/j.issn.0253-4193.2014.12.001
Citation: Lin Senjie, Wang Lu, Zheng Lianming, Dong Yunwei, Liu Shufang, Ding Shaoxiong, Ye Naihao, Cao Wenqing, Zhuang Zhimeng. Current status and future prospect of DNA barcoding in marine biology[J]. Haiyang Xuebao, 2014, 36(12): 1-17. doi: 10.3969/j.issn.0253-4193.2014.12.001

Current status and future prospect of DNA barcoding in marine biology

doi: 10.3969/j.issn.0253-4193.2014.12.001
  • Received Date: 2014-06-26
  • Rev Recd Date: 2014-08-15
  • Marine organisms are highly diverse,widely distributed,with high complexity and homoplasy. To enable fast and accurate identification of species,it is imperative to establish molecular techniques,to complement the traditional morphological metbodology. DNA barcoding provides digitalized criteria and effective means for species identification,and is becoming an important technical tool in the research on taxonomy and biodiversity. In this review,we summarize the major recent progress and current trend in DNA barcoding,particularly as it applies to the fields of marine phytoplankton (Rhodophyte,Phaeophyta,Chlorophyta,Bacillariophyta and Dinophyta),invertebrates(Spongia,Cnidaria,Custacea,Mollusca,etc.) and fish. We provide an overview of the deffectiveness and suitability of different barcoding markers in different groups of marine organisms. We also discuss current challenges and future prospects of marine DNA barcoding in hope to provide a framework for future marine DNA barcoding research in China.
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  • Hebert P D,Ratnasingham S,de Waard J R. Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species[J]. Proceedings of the Royal Society B,2003,270(S1): 96-99.
    Wang L,Zhuang Y,Zhang H,et al. DNA barcoding species in Alexandrium tamarense complex using ITS and proposing designation of five species[J]. Harmful Algae,2014,31:100-113.
    Schander C,Willassen E. What can biological barcoding do for marine biology?[J]. Marine Biology Research,2005,1(1): 79-83.
    李琪,邹山梅,郑小东,等. DNA条形码及其在海洋生物中的应用[J]. 中国海洋大学学报,2010,40(8): 43-47.
    Radulovici A E,Archambault P,Dufresne F. DNA barcodes for marine biodiversity: Moving fast forward?[J]. Diversity,2010,2(4): 450-472.
    Bucklin A,Steinke D,Blanco-Bercial L. DNA barcoding of marine metazoa[J]. Annual Review of Marine Science,2011,3(1): 471-508.
    Weigt L A,Driskell A C,Baldwin C C,et al. DNA barcoding fishes[J]. Methods Mol Biol,2012,858: 109-126.
    Velmurugan S,Prasannakumar C,Manokaran S,et al. DNA barcodes for marine fungal identification and discovery[J]. Fungal Ecology,2013,6(5): 408-418.
    Graur D,Li W H. Fundamentals of Molecular Evolution[M]. Sunderland: Sinauer Associates,1999.
    Avise J,Ellis D. Mitochondrial DNA and the evolutionary genetics of higher animals[J]. Philosophical Transactions of the Royal Society of London. B,Biological Sciences,1986,312(1154): 325-342.
    Hebert P D,Cywinska A,Ball S L,et al. Biological identifications through DNA barcodes[J]. Proceedings of the Royal Society of London B,2003,270(1512): 313-321.
    Hebert P D,Penton E H,Burns J M,et al. Ten species in one: DNAbarcoding reveals cryptic species in the neotropical skipper butterfly astraptes fulgerator[J]. Proceedings of the National Academy of Sciences of the United States of America,2004,101(41): 14812-14817.
    Elias M,Hill R I,Willmott K R,et al. Limited performance of DNA barcoding in a diverse community of tropical butterflies[J]. Proceedings of the Royal Society B: Biological Sciences,2007,274(1627): 2881-2889.
    Hausmann A,Haszprunar G,Segerer A H,et al. Now DNA-barcoded: the butterflies and larger moths of Germany[J]. Spixiana,2011,34(1): 47-58.
    Wilson J J,Sing K W,Sofian A M. Building a DNA barcode reference library for the true butterflies (Lepidoptera) of peninsula Malaysia: What about the subspecies?[J]. PloS ONE,2013,8(11): e79969.
    Johnsen A,Rindal E,Ericson P G,et al. DNA barcoding of Scandinavian birds reveals divergent lineages in trans-Atlantic species[J]. Journal of Ornithology,2010,151(3): 565-578.
    Park H Y,Yoo H S,Jung G,et al. New DNA barcodes for identification of Korean birds[J]. Genes & Genomics,2011,33(2): 91-95.
    Lijtmaer D A,Kerr K C,Stoeckle M Y,et al. DNA barcoding birds: From field collection to data analysis[J]. Methods Mol Biol,2012,858: 127-152.
    Aliabadian M,Beentjes K K,Roselaar C S,et al. DNA barcoding of Dutch birds[J]. Zookeys,2013,365: 25-48.
    Ward R D,Zemlak T S,Innes B H,et al. DNA barcoding Australia's fish species[J]. Philosophical Transactions of the Royal Society B: Biological Sciences,2005,360(1462): 1847-1857.
    Zhang J B. Species identification of marine fishes in China with DNA barcoding[J]. Evidence-Based Complementary and Alternative Medicine,2011,2011: 10.
    Becker S,Hanner R,Steinke D. Five years of FISH-BOL: brief status report[J]. Mitochondrial DNA,2011,22(S1): 3-9.
    Krück N C,Tibbetts I R,Ward R D,et al. Multi-gene barcoding to discriminate sibling species within a morphologically difficult fish genus (Sillago)[J]. Fisheries Research,2013,143: 39-46.
    Vences M,Thomas M,Bonett R M,et al. Deciphering amphibian diversity through DNA barcoding: chances and challenges[J]. Philosophical Transactions of the Royal Society B,2005,360(1462): 1859-1868.
    Kress W J,Erickson D L. A two-locus global DNA barcode for land plants: the coding rbcL gene complements the non-coding trnH-psbA spacer region[J]. PloS ONE,2007,2(6): e508.
    Lahaye R,van der Bank M,Bogarin D,et al. DNA barcoding the floras of biodiversity hotspots[J]. Proceedings of the National Academy of Sciences of the United States of America,2008,105(8): 2923-2928.
    Hollingsworth P M,Forrest L L,Spouge J L,et al. A DNA barcode for land plants[J]. Proceedings of the National Academy of Sciences of the United States of America,2009,106(31): 12794-12797.
    Stoeckle M Y,Coffran C. TreeParser-aided Klee diagrams display taxonomic clusters in DNA barcode and nuclear gene datasets[J]. Scitific Reports,2013,3: 2635.
    Grassle J F,Maciolek N J. Deep-sea species richness-regional and local diversity estimates from quantitative bottom samples [J]. American Naturalist,1992,139(2): 313-341.
    Sherwood A R,Presting G G. Universal primers amplify a 23s rDNA plastid marker in eukaryotic algae and cyanobacteria[J]. J Phycol,2007,43(3): 605-608.
    Alverson A J. Molecular systematics and the diatom species[J]. Protist,2008,159(3): 339-353.
    Ellegaard M,Godhe A,Härnström K,et al. The species concept in marine diatom: LSU rDNA-based phylogenetic differentiation in Skeletonema marionoi/dohrnii (Bacillariophyceae) is not reflected in morphology[J]. Phycologia,2008,47(2): 156-167.
    Saunders G W,McDevit D C. Methods for DNA barcoding photosynthetic protists emphasizing the macroalgae and diatoms[J]. DNA Barcodes-Methods in Molecular Biology,2012,858: 207-222.
    Litaker W R,Vandersea M W,Kibler S R,et al. Recognizing dinoflagellate species using ITS rDNA sequences[J]. Journal of Phycology,2007,43(2): 344-355.
    Lin S,Zhang H,Hou Y,et al. High-level diversity of dinoflagellates in the natural environment,revealed by assessment of mitochondrial cox1 and cob genes for dinoflagellate DNA barcoding[J]. Applied and Environmental Microbiology,2009,75(5): 1279-1290.
    Stern R F,Andersen R A,Jameson I,et al. Evaluating the Ribosomal Internal Transcribed Spacer (ITS) as a candidate dinoflagellate barcode marker[J]. PloS ONE,2012,7(8): e42780.
    Saunders G W. Applying DNA barcoding to red macroalgae: a preliminary appraisal holds promise for future applications[J]. Philosophical Transactions of the Royal Society B,2005,360(1462): 1879-1888.
    Saunders G W. Routine DNA barcoding of Canadian Gracilariales (Rhodophyta) reveals the invasive species Gracilaria vermiculophylla in British Columbia[J]. Molecular Ecology Resources,2009,9(S1): 140-150.
    崔翠菊,张立楠,王娜,等. 藻类 DNA 条形码研究进展[J]. 中国生物工程杂志,2012,32(9): 113-117.
    吴菲菲,杜国英,茅云翔. 红藻 DNA 条形码鉴定技术研究[Z]. 中国科技论文在线,2013.
    Kucera H,Saunders G W. A survey of Eangiales (Rhodophyta) based on multiple molecular markers reveals cryptic diversity[J]. Journal of Phycology,2012,48(4): 869-882.
    Saunders G W. A DNA barcode examination of the red algal family Dumontiaceae in Canadian waters reveals substantial cryptic species diversity. 1. The foliose Dilsea-Neodilsea complex and weeksia[J]. Botany,2008,86(7): 773-789.
    Tan J,Lim P E,Phang S M,et al. Assessment of four molecular markers as potential DNA barcodes for red algae Kappaphycus Doty and Eucheuma J. Agardh (Solieriaceae,Rhodophyta)[J]. PloS ONE,2012,7(12): e52905.
    Hind K R,Saunders G W. Molecular markers from three organellar genomes unravel complex taxonomic relationships within the coralline algal genus Chiharaea(Corallinales,Rhodophyta)[J]. Molecular Phylogenetics and Evolution,2013,67(2): 529-540.
    徐涤,秦松. 海洋褐藻分子系统学研究进展[J]. 海洋科学,2002,26(2): 19-22.
    McDevit D C,Saunders G W. A DNA barcode examination of the Laminariaceae (Phaeophyceae) in Canada reveals novel biogeographical and evolutionary insights[J]. Phycologia,2010,49(3): 235-248.
    Kucera H,Saunders G W. Assigning morphological variants of Fucus(Fucales,Phaeophyceae) in Canadian waters to recognized species using DNA barcoding[J]. Botany,2008,86(9): 1065-1079.
    McDevit D C,Saunders G W. On the utility of DNA barcoding for species differentiation among brown macroalgae (Phaeophyceae) including a novel extraction protocol[J]. Phycological Research,2009,57(2): 131-141.
    Mattio L,Payri C. Assessment of five markers as potential barcodes for identifying Sargassum subgenus Sargassum species (Phaeophyceae,Fucales) [J]. Cryptogamie Algologie,2010,31(4): 467-485.
    Lane C E,Lindstrom S C,Saunders G W. A molecular assessment of northeast Pacific Alaria species (Laminariales,Phaeophyceae) with reference to the utility of DNA barcoding[J]. Molecular Phylogenetics and Evolution,2007,44(2): 634-648.
    Poong S W,Lim P E,Phang S M,et al. A molecular-assisted floristic survey of crustose brown algae (Phaeophyceae) from Malaysia and Lombok Island,Indonesia based on rbcL and partial cox1 genes[J]. Journal of Applied Phycology,2014,26(2): 1231-1242.
    Saunders G W,Kucera H. An evaluation of rbcL,tufA,UPA,LSU and ITS as DNA barcode markers for the marine green macroalgae Cryptogamie[J]. Algologie,2010,31(4): 487-528.
    Fucikova K,Rada J C,Lukesova A,et al. Cryptic diversity within the genus Pseudomuriella Hanagata (Chlorophyta,Chlorophyceae,Sphaeropleales) assessed using four Barcode markers. Nova Hedwigia,2011,93(1/2): 29-46.
    Bock C,Krienitz L,Proeschold T,et al. Taxonomic reassessment of the genus Chlorella(Trebouxiophyceae) using molecular signatures (barcodes),including description of seven new species[J]. Fottea,2011,11(2): 293-312.
    Kawashima Y,Akasaki T,Matsumoto Y,et al. Species identification of imported and Japanese commercial green algal products based on phylogenetic analyses using the nrITS2 and 5S rDNA spacer regions[J]. Fisheries Science,2013,79(3): 521-529.
    丁兰平,马元元,黄冰心. DNA 条形码技术在大型海藻学研究中的应用及前景[J]. 海洋科学,2012,36(11): 103-109.
    Evans K M,Wortley A H,Mann D G. An assessment of potential diatom "barcode" genes (cox1,rbcL,18S and ITS rDNA) and their effectiveness in determining relationships in Sellaphora(Bacillariophyta) [J]. Protist,2007,158(3): 349-364.
    Hamsher S E,Saunders G W. A floristic survey of marine tube-forming diatoms reveals unexpected diversity and extensive co-habitation among genetic lines of the Berkeleya rutilans complex (Bacillariophyceae) [J]. European Journal of Phycology,2014,49(1): 47-59.
    Trobajo R,Mann D G,Clavero E,et al. The use of partial cox1,rbcL and LSU rDNA sequences for phylogenetics and species identification within the Nitzschia palea species complex (Bacillariophyceae)[J]. European Journal of Phycology,2010,45(4): 413-425.
    Moniz M B,Kaczmarska I. Barcoding diatoms: Is there a good marker?[J]. Molecular Ecology Resources,2009,9: 65-74.
    MacGillivary M L,Kaczmarska I. Survey of the efficacy of a short fragment of the rbcL gene as a supplemental DNA barcode for diatoms[J]. Journal of Eukaryotic Microbiology,2011,58(6): 529-536.
    Moniz M B,Kaczmarska I. Barcoding of diatoms: nuclear encoded ITS revisited[J]. Protist,2010,161(1): 7-34.
    Hamsher S E,Evans K M,Mann D G,et al. Barcoding diatoms: exploring alternatives to COI-5P[J]. Protist,2011,162(3): 405-422.
    Lee M A,Faria D G,Han M S,et al. Evaluation of nuclear ribosomal RNA and chloroplast gene markers for the DNA taxonomy of centric diatoms[J]. Biochemical Systematics and Ecology,2013,50: 163-174.
    Kooistra W H,Sarno D,Baizano S,et al. Global diversity and biogeography of Skeletonema species (Bacillariophyta) [J]. Protist,2008,159(2): 177-193.
    Zimmermann J,Jahn R,Gemeinholzer B. Barcoding diatoms: evaluation of the V4 subregion on the 18S rRNA gene,including new primers and protocols[J]. Organisms Diversity and Evolution,2011,11(3): 173-192.
    Zhang H,Lin S. Complex gene structure of the form II RUBISCO in the dinoflagellate Prorocentrum minimum(Dinophyceae)[J]. J Phycol,2003,39(6): 1160-1171.
    Thornhill D J,Lajeunesse T C,Santos S R. Measuring rDNA diversity in eukaryotic microbial systems: how intragenomic variation,pseudogenes,and PCR artifacts confound biodiversity estimates[J]. Molecular Ecology,2007,16(24): 5326-5340.
    Gu H F,Luo Z H,Zhang X D,et al. Morphology,ultrastructure and phylogeny of Takayama xiamenensis sp. nov. (Gymnodiniales,Dinophyceae) from the East China Sea[J]. Phycologia,2013,52(3): 256-265.
    Gu HF,Liu T T,Vale P,et al. Morphology,phylogeny and toxin profiles of Gymnodinium inusitatum sp. nov.,Gymnodinium catenatum and Gymnodinium microreticulatum (Dinophyceae) from the Yellow Sea,China[J]. Harmful Algae,2013,28: 97-107.
    Stern R F,Horak A,Andrew R L,et al. Environmental barcoding reveals massive dinoflagellate diversity in marine environments[J]. PloS ONE,2010,5(11): e13991.
    Raho N,Rodríguez F,Reguera B,et al. Are the mitochondrial cox1 and cob genes suitable markers for species of Dinophysis Ehrenberg? [J]. Harmful Algae,2013,28: 64-70.
    Lilly E L,Halanych K M,Anderson D M. Species boundaries and global biogeography of the Alexandrium tamarense complex (Dinophyceae)[J]. Journal of Phycology,2007,43(6): 1329-1338.
    Miranda L N,Zhang H,Zhuang Y,et al. Phylogenetic analysis guided by intragenomic SSU rDNA polymorphism refines classification of "Alexandrium tamarense" species complex[J]. Harmful Algae,2012,16: 35-48.
    Pochon X,Putnam H M,Burki F,et al. Identifying and characterizing alternative molecular markers for the symbiotic and Free-Living dinoflagellate genus symbiodinium[J]. PloS ONE,2012,7(1): e29816.
    LaJeunesse T C,Parkinson J E,Reimer J D. A genetics-based description of Symbiodinium minutum sp. nov. and S. psygmophilum sp. nov. (Dinophyceae),two dinoflagellates symbiotic with cnidaria[J]. Journal of Phycology,2012,48(6): 1380-1391.
    Hoef-Emden K. Pitfalls of establishing DNA barcoding systems in protists: The cryptophyceae as a test case[J]. PloS ONE,2012,7(8): e43652.
    Armstrong K F,Ball S L. DNA barcodes for biosecurity: invasive species identification[J]. Philosophical Transactions of Lthe Royal Society B,2005,360(1462): 1813-1823.
    Clarkston B E,Saunders G W. A comparison of two DNA barcode markers for species discrimination in the red algal family Kallymeniaceae (Gigartinales,Florideophyceae),with a description of Euthora timburtonii sp. nov[J]. Botany,2010,88(2): 119-131.
    Cross H B,Lowe A J,Gurgel C F D. DNA barcoding of invasive species[M]//Fif-259.
    Hu S M,Guo Z L,Li T,et al. Detecting in situ copepod diet diversity using molecular technique: Development of a copepod/symbiotic ciliate-excluding eukaryote-inclusive PCR protocol[J]. PLoS ONE,2014,9(7): e103528.
    Song H,Buhay J E,Whiting M F,et al. Many species in one: DNA barcoding overestimates the number of species when nuclear mitochondrial pseudogenes are coamplified[J]. Proceedings of the National Academy of Sciences of the United States of America,2008,105(36): 13486-13491.
    Kemppainen P,Panova M,Holl?nder J,et al. Complete lack of mitochondrial divergence between two species of NE Atlantic marine intertidal gastropods[J]. Journal of Evolutionary Biology,2009,22(10): 2000-2011.ng of morphologically indistinguishable Korean Halichondriidae sponges[J]. Molecules and Cells,2007,23(2): 220-227.
    Pöppe J,Sutcliffe P,Hooper J N,et al. COI barcoding reveals new clades and radiation patterns of Indo-Pacific sponges of the family Irciniidae (Demospongiae: Dictyoceratida)[J]. PloS One,2010,5: e9950.
    Shearer T L,Coffroth M A. Barcoding corals limited by interspecific divergence,not intraspecific variation[J]. Molecular Ecology Resources,2008,8(2): 247-255.
    Moura C J,Harris D J,Cunha M R,et al. DNA barcoding reveals cryptic diversity in marine hydroids (Cnidaria,Hydrozoa) from coastal and deep-sea environments[J]. Zoological Scripta,2008,37(1): 93-108.
    Bucklin A,Hopcroft R R,Kosobokova K N,et al. DNA barcoding of Arctic Ocean holozooplankton for species identification and recognition[J]. Deep-Sea Research Part Ⅱ,2010,57(1/2): 40-48.
    Ortman B D,Bucklin A,Pagès F,et al. DNA Barcoding the Medusozoa using mtCOI[J]. Deep-Sea Research Part Ⅱ,2010,57(24/26): 2148-2156.
    程方平,王敏晓,王彦涛,等. 中国北方习见水母类的DNA 条形码分析[J]. 海洋与湖沼,2012,43(3): 451-459.
    Laakmann S,Holst S. Emphasizing the diversity of North Sea hydromedusae by combined morphological and molecular method[J]. Journal of Plankton Research,2014,36(1): 64-76.
    Zheng L M,He J R,Lin Y S,et al. 16S rRNA is a better choice than COI for DNA barcoding hydrozoans in the coastal waters of China[J]. Acta Oceanologica Sinica,2014,33(4): 55-76.
    Radulovici A E,Sainte-Marie B,Dufresne F. DNA barcoding of marine crustaceans from the Estuary and Gulf of St Lawrence: a regional-scale approach[J]. Molecular Ecology Resources,2009,9: 181-187.
    Bucklin A,Ortman B D,Jenning R M,et al. A "Rosetta Stone" for metazoan zooplankton: DNA barcode analysis of species diversity of the Sargasso Sea (Northwest Atlantic Ocean)[J]. Deep-Sea Research Part Ⅱ,2010,57(24/26): 2234-2247.
    王敏晓,程方平,李超伦,等. 基于线粒体cox1片段序列的胶州湾浮游动物DNA 条形码分析[J]. 海洋与湖沼,2011,42(5): 702-710.
    王仁诚,王敏晓,程方平,等. 基于线粒体cox1片段序列胶州湾浮游动物物种组成分析[J]. 海洋与湖沼,2011,42(5): 711-721.
    Böttger-Schnack R,Machida R J. Comparison of morphological and molecular traits for species identification and taxonomic grouping of oncaeid copepods[J]. Hydrobiologia,2011,666(1): 111-125.
    Bucklin A,Wiebe P H,Smolenack S B,et al. DNA barcodes for species identification of euphausiids (Euphausiacea,Crustacea) [J]. Journal of Plankton Research,2007,29(6): 483-493.
    Krug P J,Ellingson R A,Burton R,et al. A new Poecilogonous species of sea slug (Opisthobranchia: Sacoglossa) from California: comparison with the planktotrophic congener Alderia modesta[J]. Journal of Molluscan Studies,2007,73(1): 29-38.
    Johnson S B,Warén A,Vrijenhoek R C. DNA Barcoding of Lepetodrilus limpets reveals cryptic species[J]. Journal of Shellfish Research,2008,27(1): 43-51.
    Nakano T,Marshall B A,Kennedy M,et al. The phylogeny and taxonomy of New Zealand Notoacmea and Patelloida species (Mollusca: Patellogastropoda: Lottiidae) inferred from DNA sequences[J]. Molluscan Research,2009,29(1): 33-59.
    Proschwitz T V,Schander C,Jueg U,et al. Morphology,ecology and DNA barcoding distinguish Pupilla pratensis (Clessin,1871) from Pupilla muscorum(Linnaeus,1758)(Pulmonata: Pupillidae)[J]. Journal of Molluscan Studies,2009,75(4): 315-322.
    Feng Y,Li Q,Kong L,et al. COⅠ-based DNA barcoding of Arcoida species (Bivalvia: Pteriomorphia) along the coast of China[J]. Molecular Ecology Resources,2011,11(3): 435-441.
    Liu J,Li Q,Kong L F,et al. Identifying the true oysters (Bivalvia: Ostreidae) with mitochondrial phylogeny and distance-based DNA barcoding[J]. Molecular Ecology Resources,2011,11(5): 820-830.
    Sekino M,Yamashita H. Mitochondrial DNA barcoding for Okinawan oysters: a cryptic population of the Portuguese oyster Crassostrea angulata in Japanese waters[J]. Fisheries Science,2013,79(1): 61-76.
    Allcock A L,Barratt I,Eléaume M,et al. Cryptic speciation and the circumpolarity debate: a case study on endemic Southern Ocean octopuses using the COI barcode of life[J]. Deep-Sea Research Part Ⅱ,2010,58(1/2): 242-249.
    Williams R C,Newman S J,Sinclair W. DNA barcoding in Nautilus pompilius (Mollusca: Cephalopoda): evolutionary divergence of an ancient species in modern times[J]. Invertebrate Systematics,2012,26(6): 548-560.
    Dai L N,Zheng X D,Kong L F,et al. DNA barcoding analysis of Coleoidea (Mollusca: Cephalopoda) from Chinese waters[J]. Molecular Ecology Resources,2012,12(3): 437-447.
    Hebert P D,Stoeckle M Y,Zemlak T S,et al. Identification of birds through DNA barcodes[J]. PLoS Biology,2004,2(10): e312.
    Dayrat B. Towards integrative taxonomy[J]. Biological Journal of the Linnean Society,2005,85(3): 407-415.
    Liu J,Li Q,Kong L F,et al. Cryptic diversity in the pen shell Atrina pectinata (Bivalvia:Pinnidae): high divergence and hybridization revealed by molecular and morphological data[J]. Molecular Ecology,2011,20(20): 4332-4345.
    Teske P R,Barker N P,McQuaid C D. Lack of genetic differentiation among four sympatric southeast African intertidal limpets (Siphonariidae): phenotypic plasticity in a single species? [J]. Journal of Molluscan Studies,2007,73(3): 223-228.
    Huang J,Dunthorn M,Song W. Expanding character sampling for the molecular phylogeny of euplotid ciliates (Protozoa,Ciliophora) using three markers,with a focus on the family Uronychiidae[J]. Molecular Phylogenetics and Evolution,2012,63(3): 598-605.
    Ishitani Y,Ujiié Y,de Vargas C,et al. Phylogenetic relationships and evolutionary patterns of the order collodaria (Radiolaria) [J]. PLoS ONE,2012,7(5): e35775.
    Santoferrara L F,McManus G B,Alder V A. Phylogeny of the order Tintinnida (Ciliophora,Spirotrichea) inferred from small-and large-subunit rRNA genes[J]. The Journal of Eukaryotic Microbiology,2012,59(4): 423-426.
    Chen L Y,Liu W W,Liu A,et al. Morphology and molecular phylogeny of a new marine hypotrichous ciliate,Hypotrichidium paraconicum n. sp. (Ciliophora,Hypotrichia) [J]. Journal of Eukaryotic Microbiology,2013,60(6): 588-600.
    Chantangsi C,Lynn D H,Brandl M T,et al. Barcoding ciliates: a comprehensive study of 75 isolates of the genus Tetrahymena[J]. International Journal of Systematic and Evolutionary Microbiology,2007,57(10): 2412-2425.
    Santoferrara L F,McManus G B,Alder V A. Utility of genetic markers and morphology for species discrimination within the order Tintinnida (Ciliophora,Spirotrichea)[J]. Protist,2013,164(1): 24-36.
    Jiang J,Xing Y,Miao M,et al. Two new marine ciliates,Caryotricha rariseta n. sp. and Discocephalus pararotatorius n. sp. (Ciliophora,Spirotrichea),with phylogenetic analyses inferred from the small subunit rRNA gene sequences[J]. The Journal of Eukaryotic Microbiology,2013,60(4): 388-398.
    Pan H,Gao F,Lin X,et al. Three new Loxophyllum species (Ciliophora: Pleurostomatida) from China with a brief review of the marine and brackish Loxophyllum species[J]. The Journal of Eukaryotic Microbiology,2013,60(1): 44-56.
    Huang J,Yi Z Z,Miao M,et al. Phylogenetic relationships within the genus Aspidisca(Protozoa,Ciliophora,Euplotida) revealed by ITS1-5.8S-ITS2 region sequences[J]. Chinese Journal of Oceanology and Limnology,2011,29(2): 277-283.
    Ortman B D. DNA Barcoding the Medusozoa and Ctenophora . USA: University of Connecticut,2008.
    Peijnenburg K T,Breeuwer J A,Pierrot-Bults A C,et al. Phylogeography of the planktonic chaetognath Sagitta setosa reveals isolation in European seas[J]. Evolution,2004,58(7): 1472-1487.
    Jennings R M,Bucklin A,Pierrot-Bults A. Barcoding of arrow worms (phylum Chaetognatha) from three oceans genetic diversity and evolution within an enigmatic phylum[J]. PLoS ONE,2010,5(4): e9949.
    Miyamoto H,Machida R J,Nishida S. Genetic diversity and cryptic speciation of the deep sea chaetognath Caecosagitta macrocephala (Fowler,1904)[J]. Deep-Sea Res Part Ⅱ,2010,57(24/26): 2211-2219.
    Miyamoto H,Machida R J,Nishida S. Global phylogeography of the deep-sea pelagic chaetognath Eukrohnia hamata[J]. Progress in Oceanography,2012,104: 99-109.
    Birky C W. Workshop on barcoded DNA: application to rotifer phylogeny,evolution,and systematics[J]. Hydrobiologia,2007,593(1): 175-183.
    Carr C M,Hardy S M,Brown T M,et al. A trioceanic perspective: DNA barcoding reveals geographic structure and cryptic diversity in Canadian polychaetes[J]. PLoS ONE,2011,6(7): e22232.
    Sewell M A,Lavery S,Baker C S. Whose larva is that? Molecular identification of planktonic larvae of the Ross Sea[J]. New Zealand Aquatic Environment and Biodiversity Report,2006(3): 1-46.
    Tang R W,Yau C,Ng W C. Identification of stomatopod larvae (Crustacea: Stomatopoda) from Hong Kong waters using DNA barcodes[J]. Molecular Ecology Resources,2010,10(3): 439-448.
    Heimeier D,Lavery S,Sewell M A. Using DNA barcoding and phylogenetics to identify Antarctic invertebrate larvae: Lessons from a large scale study[J]. Marine Genomics,2010,3(3/4): 165-177.
    Webb K E,Barnes D K A,Clark M S,et al. DNA barcoding: a molecular tool to identify Antarctic marine larvae[J]. Deep Sea Research Part II: Topical Studies in Oceanography,2006,53(8/10): 1053-1060.
    Briski E,Cristescu M E,Bailey S A,et al. Use of DNA barcoding to detect invertebrate invasive species from diapausing eggs[J]. Biological Invasions,2011,13(6): 1325-1340.
    Thomsen P F,Kielgast J,Iversen L L,et al. Detection of a diverse marine fish fauna using environmental DNA from seawater samples[J]. PLoS One,2012,7(8): e41732.
    Knebelsberger T,Landi M,Neumann H,et al. A reliable DNA barcode reference library for the identification of the North European shelf fish fauna[J]. Molecular Ecology Resources,2014,14(5): 1060-1071.
    柳淑芳,陈亮亮,戴芳群,等. 基于线粒体COI基因的DNA条形码在石首鱼科鱼类系统分类中的应用[J]. 海洋与湖沼,2010,41(2): 221-232.
    李鹏飞,朱文斌,贺舟挺,等. 东海带鱼DNA 条形码的建立及COI序列变异分析[J].浙江海洋学院学报,2013,32(1): 6-9.
    杨凡. 中国鲽形目鱼类的 DNA 分子条形码及褐牙鲆的遗传多样性研究 . 广州: 暨南大学,2010.
    Di Pinto A,Di Pinto P,Terio V,et al. DNA barcoding for detecting market substitution in salted cod fillets and battered cod chunks[J]. Food Chemistry,2013,141(3): 1757-1762.
    Dunn M R,Szabo A,McVeagh M S,et al. The diet of deepwater sharks and the benefits of using DNA identification of prey[J]. Deep Sea Research Part Ⅰ: Oceanographic Research Papers,2010,57(7): 923-930.
    Schlei O L,Crête-Lafreniere A,Whiteley A R,et al. DNA barcoding of eight North American coregonine species[J]. Molecular Ecology Resources,2008,8(6): 1212-1218.
    Page T,Hughes J. Comparing the performance of multiple mitochondrial genes in the analysis of Australian freshwater fishes[J]. Journal of Fish Biology,2010,77(9): 2093-2122.
    Blankenship L E,Yayanos A A. Universal primers and PCR of gut contents to study marine invertebrate diets[J]. Molecular Ecology,2005,14(3): 891-899.
    Martin D L,Ross R M,Quetin L B,et al. Molecular approach (PCR-DGGE) to diet analysis in young Antarctic krill Euphausia superba[J]. Marine Ecology Progress Series,2006,319: 155-165.
    Troedsson C,Simonelli P,Nägele V,et al. Quantification of copepod gut content by differential length amplification quantitative PCR (dla-qPCR)[J]. Mar Biol,2009,156(3): 253
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