The community composition of bacterioplankton at typical station in the Changjiang Estuary

LI He-yang; CHEN Ming-xia; JIAO Nian-zhi

Article Contents

Article Navigation > Haiyang Xuebao > 2012 > 34(1): 183-188

LI He-yang, CHEN Ming-xia, JIAO Nian-zhi. The community composition of bacterioplankton at typical station in the Changjiang Estuary[J]. Haiyang Xuebao, 2012, 34(1): 183-188.

Citation:

LI He-yang, CHEN Ming-xia, JIAO Nian-zhi. The community composition of bacterioplankton at typical station in the Changjiang Estuary[J]. Haiyang Xuebao, 2012, 34(1): 183-188.

LI He-yang, CHEN Ming-xia, JIAO Nian-zhi. The community composition of bacterioplankton at typical station in the Changjiang Estuary[J]. Haiyang Xuebao, 2012, 34(1): 183-188.

Citation:

LI He-yang, CHEN Ming-xia, JIAO Nian-zhi. The community composition of bacterioplankton at typical station in the Changjiang Estuary[J]. Haiyang Xuebao, 2012, 34(1): 183-188.

PDF( 1876 KB)

The community composition of bacterioplankton at typical station in the Changjiang Estuary

1.
Third Institute of Oceanography, State Oceanic Administration, Xiamen 361005, China
2.
Third Institute of Oceanography, State Oceanic Administration, Xiamen 361005, China;College of Chemical Engineering, Huaqiao University, Xiamen, 361021 China
3.
State Key Laboratory of Marine Enviromental Science, Xiamen University, Xiamen 361005, China

Received Date: 2009-12-25
Rev Recd Date: 2011-06-07

Abstract

- Changjiang Estuary,
- bacterioplankton,
- community composition,
- 16S rDNA 

FullText(HTML)

References(40)

References

HEAD I M, SAUNDERS J R, PICKUP R W. Microbial evolution, diversity, and ecology: a decade of ribosomal RNA analysis of uncultivated microorganisms[J]. Microb Ecol, 1998, 35(1):1-21.

FIERER N, JACKSON R B. The diversity and biogeography of soil bacterial communities[J]. Proc Natl Acad Sci USA, 2006, 103(3):626-631.

李涛,王鹏,汪品先.南海南部陆坡表层沉积物细菌和古菌多样性[J].微生物学报,2008,48(3):323-329.

WANG G H, DONG J D, LI X, et al. The bacterial diversity in surface sediment from the South China Sea[J]. Acta Oceanol Sinica, 2010,29(4):98-105.

CHANG Y L, WANG E T, SUI X H, et al. Molecular diversity and phylogeny of rhizobia associated with Lablab purpureus (Linn.) grown in southern China[J]. Syst Appl Microbiol, 2011, 34(4):276-284.

LI L, KATO C, HORIKOSHI K. Bacterial diversity in deep-sea sediments from different depths[J]. Biodivers Conserv, 1999, 8(5):659-677.

BAIK K S, PARK S C, KIM E M, et al. Diversity of bacterial community in freshwater of Woopo wetland[J]. J Microbiol, 2008, 66(6):647-655.

张建萍,董乃源,余浩滨,等. 应用16S rDNA-RFLP方法分析宁夏地区稻田土壤细菌的多样性[J].生物多样性,2008,16(6):586-592.

LI H, YU Y, LUO W, et al. Bacterial diversity in surface sediments from the Pacific Arctic Ocean[J]. Extremophiles, 2009, 13(2):233-46.

TOBLER D J, BENNING L G. Bacterial diversity in five Icelandic geothermal waters: temperature and sinter growth rate effects[J]. Extremophiles, 2011, 15(4):473-485.

PACE N R. A molecular view of microbial diversity and the biosphere[J]. Science, 1997, 276(5313):734-740.

LU J, DOMINGO J W S, LAMENDELLA R, et al. Phylogenetic diversity and molecular detection of bacteria in gull feces[J]. Appl Environ Microbiol, 2008, 74(13): 3969-3976.

SEKIGUCHI H, KOSHIKAWA H, HIROKI M, et al. Bacterial distribution and phylogenetic diversity in the Changjiang estuary before the construction[J]. Microb Ecol, 2002, 43(1):82-91.

VELJI M I, ALBRIGHT L J. Microscopic enumeration of attached marine bacteria of seawater, marine sediment, fecal matter, and kelp blade samples following pyrophosphate and ultrasound treatments[J]. Can J Microbiol, 1986, 32(2):121-126.

SCHALLENBERG M, KALFF J. Solutions to problems in enumerating sediment bacteria by direct counts[J]. Appl Environ Microbiol, 1989, 55(5):1214-1219.

PORTER K G, FEIG Y C. The use of DAPI for identifying and counting aquatic microflora[J]. Limnol Oceanogr, 1980, 25(5):943-948.

Protocols for the Joint Global Ocean Flux studies (JGOFS) core measurements[R]//JGOFS REPORT No.19. JGOFS International Project Office Center for Studies of Environment and Resources. Bergen, Norway Scor, Protocol for the JGOFS core measurements. June 1996.

GORDON D A, GIOVANNONI S J. Detection of stratified microbial populations related to Chlorobium and Fibrobacter species in the Atlantic and Pacific Oceans[J]. Appl Environ Microbiol, 1996, 62(4):1171-1177.

GIOVANNONI S J. The polymerase chain reaction[M]//STACKEBRANDT E, GOODFELLOW M. Nucleic Acid Techniques in Bacterial Systematics. New York:John Wiley & Sons, Inc. ,1991: 177-203.

ACHENBACH L, WOESE C. 16S and 23S rRNA-like primers[K]//SOWER K R, SCHREIER H J. A Laboratory Manual.Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press, 1995: 521-523.

MAIDAK B L, OLSEN G J. The RDP (ribosomal database project)[J]. Nucleic Acids Research, 1997, 25(1):109-111.

THOMPSON J D, HIGGINS D G. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice[J]. Nucleic Acids Research, 1994, 22(22):4673-4680.

KIMURA M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences[J]. J Mol Evol, 1980, 16(2):111-120.

SAITOU N, NEI M. The neighbor-joining method: a new method for reconstructing phylogenetic trees[J]. Mol Biol Evol, 1987, 4(4):406-425.

STACKEBRANDT E, GOEBEL B M. Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology[J]. Int J Syst Bacteriol, 1994, 44(4): 846-849.

RAPPE M S, KEMP P F, GIOVANNONI S J. Phylogenetic diversity of marine coastal picoplankton 16S rRNA genes cloned from the continental shelf off Cape Hatteras, North Carolina[J]. Limnol Oceanogr, 1997, 42(5):811-826.

BAKERMANS C, MADSEN E L. Diversity of 16S rDNA and naphthalene dioxygenase genes from coal-tar-waste-contaminated[J]. Microb Ecol, 2002, 44(2):95-106.

GLOCKNER F O, FUCHS B M, AMANN R. Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization[J]. Appl Environ Microbiol, 1999, 65(8):3721-3726.

HOVANEC T A, DELONG E F. Comparative analysis of nitrifying bacteria associated with freshwater and marine aquaria[J]. Appl Environ Microbiol, 1996, 62(8):2888-2896.

VOYTEK M A. WARD B B. Detection of ammonium-oxidizing bacteria of the beta-subclass of the class proteobacteria in aquatic samples with the PCR[J]. Appl Environ Microbiol, 1995, 61(4):1444-1450.

孙鑫鑫,刘惠荣,冯福应,等. 乌梁素海富营养化湖区浮游细菌多样性及系统发育分析[J].生物多样性,2009,17(5):490-498.

王鹏,李涛.南海北部陆坡深水区沉积物细菌多样性调查[J].海洋科学,2008,32(4):36-39.

曲良. 北大西洋典型海湾浮游异养细菌群落特征研究[D]. 青岛: 中国海洋大学.2010.

BOUVIER T C, GIORGIO P A. Compositional changes in free-living bacterial communities along a salinity gradient in two temperate estuaries[J]. Limnol Oceanogr, 2002, 47(2):453-470.

RAVENSCHLG K, SAHM K, AMANN R. Quantitative molecular analysis of the microbial community in marine arctic sediments (Svalbard)[J]. Appl Environ Microbiol, 2001, 67(1):387-395.

WEBSTER N S, WILSON K J, BLACKALL L L, et al. Phylogenetic diversity of bacteria associated with the marine sponge Rhopaloeides odorabile[J]. Appl Environ Microbiol, 2001, 67(1):434-444.

KAPLEY A, SIDDIQUI S, MISRA K, et al. Preliminary analysis of bacterial diversity associated with the Porites coral from the Arabian sea[J]. World J Microbiol Biotechnol, 2007, 23(7):923-930.

DOUCETTE G J, TRICK C G. Characterization of bacteria associated with different isolates of Alexandrium tamarense[M]//LASSUS P, ARZUL G, ERARD E, et al.Harmful Marine Algal Blooms. Paris:Lavoisier Sci Publ, 1995.

ADELEKE A, PRUCKLER J, BENSON R, et al. Legionella-like amebal pathogens-phylogenetic status and possible role in respiratory disease[J]. Emerging Infect Dis, 1996, 2(3):225-230.

MA Y, WANG L, QIAN L M. Community structure of β-proteobacterial ammonia-oxidizing bacteria in prawn farm sediment[J]. Prog Nat Sci, 2008, 18(6):679-684.

Relative Articles

Supplements(0)

Cited By

Proportional views