Citation: | LIANG Jun-rong, CHEN Dan-dan, GAO Ya-hui, CHENG Jin-feng. A review on the process and mechanism of marine diatom silica structure formation[J]. Haiyang Xuebao, 2010, 32(5): 1-8. |
NELSON D M, TRGUER P, BREZZINSKI M A, et al. Production and dissolution of biogenic silica in the ocean: revised global estimates, comparison with regional data and relationship to biogenic sedimentation[J]. Global Biogeochem Cycl, 1995, 9: 359—431.
|
FIELD C B, BEHRENFELD M J, RABERSON J T, et al. Primary production of the biosphere: integrating terrestrial and oceanic components[J]. Science, 1998, 281(5374): 237—240.
|
KRGER N, SUMPER M. The molecular basis of diatom biosilica formation[M]// BAEUERLEIN E. Biomineralization: Progress in Biology,Molecular Biology and Application. Berlin: Wiley-VCH,2004:137.
|
HILDEBRAND M, VOLCANI B E, GASSMANN W, et al. A gene family of silicon transporters[J]. Nature, 1997, 385(6618): 688—689.
|
SUMPER M, BRUNNER E. Silica biomineralization in diatoms: the model organism Thalassiosira pseudonana[J]. Chem Bio Chem, 2008, 9: 1187—1194.
|
SUMPER M, KRGER N. Silica formation in diatoms: the function of long-chain polyamines and silaffins[J]. Journal of Materials Chemistry, 2004, 14: 2059—2065.
|
GORDON R, LOSIC D, TIFFANY M A, et al. The glass menagerie: diatoms for novel applications in nanotechnology[J]. Trends in Biotechnology, 2008, 27(2): 116—127.
|
HAZELAAR S, AVN DER STRATE H J, GIESKES W W C, et al. Monitoring rapid valve formation in the pennate diatom Navicula salinarum(Bacillariophyceae)[J]. Journal of Phycology, 2005, 41(2): 354—358.
|
GORDON R, DRUM R W. The chemical basis for diatom morphogenesis[J]. Int Rev Cytol 1994, 150: 243—372.
|
LENOCI L, CAMP P J. Diatom structures templated by phase-separated fluids[J]. Langmuir, 2008, 24: 217—223.
|
TIFFANY M A. Valve development in Aulacodiscus[J]. Diatom research, 2008, 23: 185-212.
|
BHATTACHARYYA P, VOLCANI B E. Sodium-dependent silicate transport in the apochlorotic marine diatom Nitzschia alba[J]. Proc Natl Acad Sci U S A, 1980, 77(10): 6386—6390.
|
HILDEBRAND M. Silicic acid transport and its control during cell wall silicification in diatoms[M]//BAEUERLEIN E. Biomineralization: Progress in Biology, Molecular Biology and Application. Berlin:Wiley-VCH, 2004: 159.
|
THAMATRAKOLN K, ALVERSON A J, HILDEBRAND M. Comparative sequence analysis of diatom silicon transporters: toward a mechanistic model of silicon transport[J]. Journal of Phycology, 2006, 42(4): 822—834.
|
GRACHEV MA, DENIKINA N N, BELIKOV S I, et al. Elements of the active center of silicic acid transporters in diatoms[J]. Mol Biol: Mosk, 2002, 36(4): 679—681.
|
LIKHOSHWAY Y V, MASYUKOVA Y A, SHERBAKOVA T A, et al. Detection of the gene responsible for silicic acid transport in chrysophycean algae[J]. Dokl Biol Sci, 2006, 408: 256—260.
|
SHERBAKOVA T A, MASYUKOVA Y, SAFONOVA T P, et al. Conserved motif CMLD in silicic acid transport proteins of diatoms[J]. Molecular Biology, 2005, 39: 269—280.
|
HILDEBRAND M, DAHLIN K, VOLCANI B E. Characterization of a silicon transporter gene family in Cylindrotheca fusiformis: sequences, expression analysis, and identification of homologs in other diatoms[J]. Molecular and General Genetics, 1998, 260(5): 480—486.
|
SCHRDER H C, PEROVIC-OTTSTADT S, ROTHENBERGER M, et al. Silica transport in the demosponge Suberites domuncula: fluorescence emission analysis using the PDMPO probe and cloning of a potential transporter[J]. Biochemical Journal, 2004, 381: 665—673.
|
MA J F, TAMAI K, YAMAJI N, et al. A silicon transporter in rice[J]. Nature, 2006, 440(7084): 688—691.
|
RUETER J G, MOREL F M M. The interaction between zinc deficiency and copper toxicity as it affects the silicic acid uptake mechanisms in Thalassiosira pseudonana[J]. Limnology and Oceanography, 1981, 26(1): 67—73.
|
GRACHEV M, SHERBAKOVA T, MASYUKOVA Y, et al. A potential zinc-binding motif in silicic acid transport proteins of diatoms[J]. Diatom Research, 2005, 20(2): 409—411.
|
THAMATRAKOLN K, HILDEBRAND M. Analysis of Thalassiosira pseudonana silicon transporters indicates distinct regulatory levels and transport activity through the cell cycle[J]. Eukaryotic Cell, 2007, 6(2): 271—279.
|
THAMATRAKOLN K, HILDERBAND M. Silicon uptake in diatoms revisited: a model for saturable and nonsaturable uptake kinetics and the role of silicon transporters[J]. Plant Physiology, 2008, 146(3): 1397—1407.
|
HILDEBRAND M, DOKTYCZ M J, ALLISON D P. Application of AFM in understanding biomineral formation in diatoms[J]. Pflugers Archiv-European Journal of Physiology, 2008, 456(1): 127—137.
|
ALVERSON A J. Strong purifying selection in the silicon transporters of marine and freshwater diatoms[J]. Limnology and Oceanography, 2007, 52(4): 1420—1429.
|
SULLIVAN C W. Diatom mineralization of silicic acid: II. Regulation of silicic acid transport rates during the cell cycle of Navicula pelliculosa[J]. Journal of Phycology 1977, 13(1): 86—91.
|
HILDEBRAND M, FRIGERI L G, DAVIS A K. Synchronized growth of Thalassiosira pseudonana(Bacillariophyceae) provides novel insights into cell-wall synthesis processes in relation to the cell cycle[J]. Journal of Phycology, 2007, 43(4): 730—740.
|
POULSEN N, CHESLEY P M, KROGER N. Molecular genetic manipulation of the diatom Thalassiosira pseudonana(Bacillariophyceae)[J]. Journal of Phycology, 2006, 42(5): 1059—1065.
|
POULSEN N, KRGER N. A new molecular tool for transgenic diatoms: control of mRNA and protein biosynthesis by an inducible promoter-terminator cassette[J]. FEBS J, 2005, 272(13): 3413—3423.
|
FORSBERG H, LJUNGDAHL P O. Sensors of extracellular nutrients in Saccharomyces cerevisiae[J]. Curr Genet, 2001, 40(2): 91—109.
|
VAN BELLE D, ANDRE B. A genomic view of yeast membrane transporters[J]. Curr Opin Cell Biol, 2001, 13(4): 389—398.
|
KRGER N, BERGSDORF C, SUMPER M. A new calcium binding glycoprotein family constitutes a major diatom cell wall component.[J]. EMBO J, 1994, 13(19): 4676—4683.
|
KRGER N, BERGSDORF C, SUMPER M. Frustulins: domain conservation in a protein family associated with diatom cell walls[J]. Eur J Biochem, 1996, 239(2): 259—264.
|
KRGER N, DEUTZMANN R, BERGSDORF C, et al. Species-specific polyamines from diatoms control silica morphology[J]. Proc Natl Acad Sci U S A, 2000, 97(26): 14133—14138.
|
KRGER N, DEUTZMANN R, SUMPER M. Polycationic peptides from diatom biosilica that direct silica nanosphere formation[J]. Science, 1999, 286(5442): 1129—1132.
|
KRGER N, LEHMANN G, RACHEL R, et al. Characterization of a 200-kDa diatom protein that is specifically associated with a silica-based substructure of the cell wall[J]. Eur J Biochem, 1997, 250(1): 99—105.
|
VAN DE POLL WH, VRIELING E G, GIESKES W W C. Location and expression of frustulins in the pennate diatoms Cylindrotheca fusiformis, Navicula pelliculosa, and Navicula salinarum(Bacillariophyceae)[J]. Journal of Phycology, 1999, 35: 1044—1053.
|
KRGER N, WETHERBEE R. Pleuralins are involved in theca differentiation in the diatom Cylindrotheca fusiformis[J]. Protist, 2000, 151(3): 263—273.
|
KRGER N, LORENZ S, BRUNNER E, et al. Self-assembly of highly phosphorylated silaffins and their function in biosilica morphogenesis[J]. Science, 2002, 298(5593): 584—586.
|
POULSEN N, SSMPER M, KRGER N. Biosilica formation in diatoms: characterization of native silaffin-2 and its role in silica morphogenesis[J]. Proc Natl Acad Sci USA, 2003, 100(21): 12075—12080.
|
WONG PO FOO C, HUANG J, KAPLAN D L. Lessons from seashells: silica mineralization via protein templating[J]. Trends Biotechnol, 2004, 22: 577—585.
|
POULSEN N, KRGER N. Silica morphogenesis by alternative processing of silaffins in the diatom Thalassiosira pseudonana[J]. J Biol Chem, 2004, 279(41): 42993—42999.
|
ARMBRUST E V, BERGES J A, BOWLER C, et al. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism[J]. Science, 2004, 306(5693): 79—86.
|
PICKETT-HEAPS J D, JEREMY S, ANNA M M, et al. The cell biology of diatom valve formation[J]. Progress in Phycological Research, 1990, 7: 1—167.
|
VAN DE MEENE A M L, PICKETT-HEAPS J D. Valve morphogenesis in the centric diatom Proboscia alata sundstrom[J]. Journal of Phycology, 2002, 38: 351—363.
|
VRIELING E G, GIESHES W W C. Silicon deposition diatoms: control by the pH inside the silicon deposition vesicle[J]. Journal of Phycology, 1999, 35: 548—559.
|
BRZEZINSKI M A, OLSON R J, CHISHOLM S W. Silicon availability and cell-cycle progression in marine diatoms[J]. Mar Ecol Prog Ser, 1990, 67: 83—96.
|
TAYLOWR N J. Silica incorporation in the diatom Cosinodiscus granii as affected by light intensity[J]. European Journal of Phycology, 1985, 20(4): 365—374.
|
EDGAR L A, PICKETT-HEAPS J D. Valve morphogenesis in the pennate diatom Navicula cuspidata[J]. Journal of Phycology, 1984, 20(1): 47—61.
|
PICKETT-HEAPS J D. Cell division and morphogenesis of the centric diatom Chaetoceros decipiens(Bacillariophyceae): I. Living cells[J]. Journal of Phycology, 1998, 34: 989—994.
|
BLANK G S, SULLIVAN C W. Diatom mineralization of silicic acid: VI. The effects of microtubule inhibitors on silicic acid metabolism in Navicula saprophila[J]. Journal of Phycology, 1983, 19(1): 39—44.
|
SCHNEPF E, DEICHGRABER G, DREBES G. Morphogenetic processes in Attpheya decora(Bacillariophyceae, Biddulphiineae)[J]. Plant Systematics and Evalution, 1980, 135: 265—277.
|
HILDEBRAND M. Diatoms, biomineralization processes, and genomics[J]. Chemical Reviews, 2008, 108(11): 4855—4874.
|
ROGERSON A, DE FREITAS A S W, MCLNNES A G. Growth rates and ultrastucture of siliceous setae of Chaetoeros gracilis(Bacilicariophyceae)[J]. Journal of Phycology, 1986, 22(1): 56—62.
|
MOCK T, SAMANTA M P, LVERSON V, et al. Whole-genome expression profiling of the marine diatom Thalassiosira pseudonana identifies genes involved in silicon bioprocesses[J]. PNAS, 2008, 105(5): 1579—1584.
|