Structure of the mitochondrial DNA control region of snapper species and their phylogenetic relationship

TAN Wei; GUO Yu-song; WANG Zhong-duo; LIU Chu-wu; LIU Li

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TAN Wei, GUO Yu-song, WANG Zhong-duo, LIU Chu-wu, LIU Li. Structure of the mitochondrial DNA control region of snapper species and their phylogenetic relationship[J]. Haiyang Xuebao, 2010, 32(1): 139-145.

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TAN Wei, GUO Yu-song, WANG Zhong-duo, LIU Chu-wu, LIU Li. Structure of the mitochondrial DNA control region of snapper species and their phylogenetic relationship[J]. Haiyang Xuebao, 2010, 32(1): 139-145.

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Structure of the mitochondrial DNA control region of snapper species and their phylogenetic relationship

Key Laboratory of Aquaculture of Guangdong Higher Education for South China Sea Aquatic Economic Animals, Fisheries College, Guangdong Ocean University, Zhanjiang 524025,China

Received Date: 2009-06-08

Abstract

Abstract

Complete sequences of the mitochondrial DNA control region from 11 species of snapper species were amplified by polymerase chain reaction (PCR) and directly sequenced. The structure of the control region was analyzed with six other species of snapper from GenBank. According to the alignment, three domains, the termination associated sequence domain (TAS), the central conserved domain (CD) and the conserved sequence block domain (CSB), were identified in the mtDNA control region of snapper species. The extended termination associated sequence (ETAS), three conserved blocks (CSB-F, CSB-D,CSB-D) in the central conserved sequence block domain and three conserved sequence blocks (CSB1,CSB2,CSB3) in the conserved sequence block domain were successfully identified. With Emmelichthys struhsakeri as outgroup, the phylogenetic trees were constructed using the neighbor-joining (NJ) method and the minimum evolution (ME) method. It can be concluded that the control region can be used for the phylogenetic analysis, and the phylogenetic relationships from mtDNA data are consistent with Allen’s morphology-based system.
- snapper species,
- mitochondrial DNA,
- control region,
- phylogeny

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References(29)

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