Citation: | Gao Yang,Li Haitao,Jiang Chongchen, et al. Taxonomy and phylogeography of Clio species based on mtCOI and 18S rRNA genes[J]. Haiyang Xuebao,2020, 42(2):96–105,doi:10.3969/j.issn.0253−4193.2020.02.010 |
[1] |
Bednaršek N, Možina J, Vučković M, et al. Global distribution of pteropods representing carbonate functional type biomass[J]. Earth System Science Data Discussions, 2012, 5(1): 317−350. doi: 10.5194/essdd-5-317-2012
|
[2] |
Hunt B P V, Pakhomov E A, Hosie G W, et al. Pteropods in southern ocean ecosystems[J]. Progress in Oceanography, 2008, 78(3): 193−221. doi: 10.1016/j.pocean.2008.06.001
|
[3] |
Flores H, van Franeker J A, Cisewski B, et al. Macrofauna under sea ice and in the open surface layer of the Lazarev Sea, Southern Ocean[J]. Deep Sea Research Part II: Topical Studies in Oceanography, 2011, 58(19/20): 1948−1961.
|
[4] |
Howard W R, Roberts D, Moy A D, et al. Distribution, abundance and seasonal flux of pteropods in the Sub-Antarctic zone[J]. Deep Sea Research Part II: Topical Studies in Oceanography, 2011, 58(21/22): 2293−2300.
|
[5] |
Bednaršek N, Harvey C J, Kaplan I C, et al. Pteropods on the edge: cumulative effects of ocean acidification, warming, and deoxygenation[J]. Progress in Oceanography, 2016, 145: 1−24. doi: 10.1016/j.pocean.2016.04.002
|
[6] |
Fabry V J, Seibel B A, Feely R A, et al. Impacts of ocean acidification on marine fauna and ecosystem processes[J]. ICES Journal of Marine Science, 2008, 65(3): 414−432. doi: 10.1093/icesjms/fsn048
|
[7] |
Gardner J, Manno C, Bakker D C E, et al. Southern Ocean pteropods at risk from ocean warming and acidification[J]. Marine Biology, 2018, 165(1): 8. doi: 10.1007/s00227-017-3261-3
|
[8] |
张福绥. 中国近海的浮游软体动物. I. 翼足类、异足类及海蜗牛类的分类研究[J]. 海洋科学集刊, 1964(5): 125−226.
Zhang Fusui. The pelagic molluscs off China coast Ⅰ. A systemic study of Pteropoda (Opisthobranchia), Heteropoda (Prosobranchia) and Janthinidae (Ptenoglossa, Prosobranchia)[J]. Studia Marina Sinica, 1964(5): 125−226.
|
[9] |
Robertson R. Dispersal and wastage of larval Philippia krebsii (Gastropoda: Architectonicidae) in the north Atlantic[J]. Proceedings of the Academy of Natural Sciences of Philadelphia, 1964, 116: 1−27.
|
[10] |
Bieler R. Architectonicidae of the Indo-Pacific (Mollusca, Gastropoda)[M].Stuttgart: Abhandlungen des Naturwissenschaftlichen Vereins in Hamburg, 1993.
|
[11] |
Bontes B, van der Spoel S. Variation in Diacria trispinosa group, new interpretation of colour patterns and description of D. rubecula n. sp. (Pteropoda)[J]. Bulletin Zoölogisch Museum, Universiteit van Amsterdam, 1998, 16(11): 77−84.
|
[12] |
Hebert P D N, Cywinska A, Ball S L, et al. Biological identifications through DNA Barcodes[J]. Proceedings of the Royal Society B: Biological Sciences, 2003, 270(1512): 313−321. doi: 10.1098/rspb.2002.2218
|
[13] |
Jennings R M, Bucklin A, Ossenbrügger H, et al. Species diversity of planktonic gastropods (Pteropoda and Heteropoda) from six ocean regions based on DNA barcode analysis[J]. Deep Sea Research Part Ⅱ: Topical Studies in Oceanography, 2010, 57(24/26): 2199−2210.
|
[14] |
Maas A E, Blanco-Bercial L, Lawson G L. Reexamination of the species assignment of Diacavolinia pteropods using DNA barcoding[J]. PLoS One, 2013, 8(1): e53889. doi: 10.1371/journal.pone.0053889
|
[15] |
Gasca R, Janssen A W. Taxonomic review, molecular data and key to the species of Creseidae from the Atlantic Ocean[J]. Journal of Molluscan Studies, 2014, 80(1): 35−42. doi: 10.1093/mollus/eyt038
|
[16] |
Wall-Palmer D, Burridge A K, Goetze E, et al. Biogeography and genetic diversity of the atlantid heteropods[J]. Progress in Oceanography, 2018, 160: 1−25. doi: 10.1016/j.pocean.2017.11.004
|
[17] |
Burridge A K, Goetze E, Raes N, et al. Global biogeography and evolution of Cuvierina pteropods[J]. BMC Evolutionary Biology, 2015, 15: 39. doi: 10.1186/s12862-015-0310-8
|
[18] |
李海涛, 何薇, 周鹏, 等. 伶鼬榧螺(Oliva mustelina)的分子鉴定及其形态变异[J]. 海洋学报, 2015, 37(4): 117−123.
Li Haitao, He Wei, Zhou Peng, et al. Molecular identification of Oliva mustelina and its morphological variation[J]. Haiyang Xuebao, 2015, 37(4): 117−123.
|
[19] |
Folmer O, Black M, Heah W, et al. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates[J]. Molecular Marine Biology and Biotechnology, 1994, 3(5): 294−299.
|
[20] |
Vonnemann V, Schrödl M, Klussmann-Kolb A, et al. Reconstruction of the phylogeny of the Opisthobranchia (Mollusca: Gastropoda) by means of 18s and 28s rRNA gene sequences[J]. Journal of Molluscan Studies, 2005, 71(2): 113−125. doi: 10.1093/mollus/eyi014
|
[21] |
Ronquist F, Teslenko M, van der Mark P, et al. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space[J]. Systematic Biology, 2012, 61(3): 539−452. doi: 10.1093/sysbio/sys029
|
[22] |
Darriba D, Taboada G L, Doallo R, et al. jModelTest 2: more models, new heuristics and parallel computing[J]. Nature Methods, 2012, 9(8): 772.
|
[23] |
Fujisawa T, Barraclough T G. Delimiting species using single-locus data and the generalized Mixed Yule coalescent approach: a revised method and evaluation on simulated data sets[J]. Systematic Biology, 2013, 62(5): 707−724. doi: 10.1093/sysbio/syt033
|
[24] |
Puillandre N, Lambert A, Brouillet S, et al. ABGD, automatic barcode gap discovery for primary species delimitation[J]. Molecular Ecology, 2012, 21(8): 1864−1877. doi: 10.1111/j.1365-294X.2011.05239.x
|
[25] |
Drummond A J, Rambaut A. BEAST: bayesian evolutionary analysis by sampling trees[J]. BMC Evolutionary Biology, 2007, 7: 214. doi: 10.1186/1471-2148-7-214
|
[26] |
van der Spoel S, Dadon J R. Pteropoda[M]//Boltovskoy D. South Atlantic zooplankton. Leiden, The Netherlands: Backhuys, 1999: 649−706.
|
[27] |
Palumbi S R. Genetic divergence, reproductive isolation, and marine speciation[J]. Annual Review of Ecology and Systematics, 1994, 25: 547−572. doi: 10.1146/annurev.es.25.110194.002555
|
[28] |
Chen Gang, Hare M P. Cryptic diversity and comparative phylogeography of the estuarine copepod Acartia tonsa on the US Atlantic coast[J]. Molecular Ecology, 2011, 20(11): 2425−2441. doi: 10.1111/j.1365-294X.2011.05079.x
|
[29] |
Peijnenburg K T C A, Goetze E. High evolutionary potential of marine zooplankton[J]. Ecology and Evolution, 2013, 3(8): 2765−2781. doi: 10.1002/ece3.644
|
[30] |
Goetze E, Hüdepohl P T, Chang C, et al. Ecological dispersal barrier across the equatorial Atlantic in a migratory planktonic copepod[J]. Progress in Oceanography, 2017, 158: 203−212. doi: 10.1016/j.pocean.2016.07.001
|
[31] |
Toole J M, Millard R C, Wang Z, et al. Observations of the pacific north equatorial current bifurcation at the Philippine coast[J]. Journal of Physical Oceanography, 1990, 20(2): 307−318. doi: 10.1175/1520-0485(1990)020<0307:OOTPNE>2.0.CO;2
|
[32] |
Hunt B, Strugnell J, Bednarsek N, et al. Poles apart: the “bipolar” pteropod species Limacina helicina is genetically distinct between the Arctic and Antarctic oceans[J]. PLoS One, 2010, 5(3): e9835. doi: 10.1371/journal.pone.0009835
|
[33] |
Hebert P D N, Stoeckle M Y, Zemlak T S, et al. Identification of birds through DNA barcodes[J]. PLoS Biology, 2004, 2(10): e312. doi: 10.1371/journal.pbio.0020312
|
[34] |
李琪, 刘君, 孔令锋. 种的概念及种的界定与鉴定[J]. 中国海洋大学学报, 2014, 44(10): 57−64.
Li Qi, Liu Jun, Kong Lingfeng. Species concept, species delimitation and species identification[J]. Periodical of Ocean University of China, 2014, 44(10): 57−64.
|
[35] |
林森杰, 王路, 郑连明, 等. 海洋生物DNA条形码研究现状与展望[J]. 海洋学报, 2014, 36(12): 1−17.
Lin Senjie, Wang Lu, Zheng Lianming, et al. Current status and future prospect of DNA barcoding in marine biology[J]. Haiyang Xuebao, 2014, 36(12): 1−17.
|
[36] |
Avise J C. Phylogeography: The History and Formation of Species[M]. Cambridge (Massachusetts): Harvard University Press, 2000: 447.
|
[37] |
Avise J C. Molecular markers, natural history and evolution[M]. 2nd ed. Sunderland (Massachusetts): Sinauer Associates, 2004: 541.
|
[38] |
Wiemers M, Fiedler K. Does the DNA barcoding gap exist?-a case study in blue butterflies (Lepidoptera: Lycaenidae)[J]. Frontiers in Zoology, 2007, 4: 8. doi: 10.1186/1742-9994-4-8
|
[39] |
Ortman B D, Bucklin A, Pagès F, et al. DNA barcoding the Medusozoa using mtCOI[J]. Deep Sea Research Part II: Topical Studies in Oceanography, 2010, 57(24/26): 2418−2156.
|
[40] |
刘青青, 董志军. 基于线粒体COI基因分析钩手水母的群体遗传结构[J]. 生物多样性, 2018, 26(11): 1204−1211. doi: 10.17520/biods.2018044
Liu Qingqing, Dong Zhijun. Population genetic structure of Gonionemus vertens based on the mitochondrial COI sequence[J]. Biodiversity Science, 2018, 26(11): 1204−1211. doi: 10.17520/biods.2018044
|
[41] |
Bucklin A, Wiebe P H, Smolenack S B, et al. DNA barcodes for species identification of euphausiids (Euphausiacea, Crustacea)[J]. Journal of Plankton Research, 2007, 29(6): 483−493. doi: 10.1093/plankt/fbm031
|
[42] |
Durbin A, Hebert P D N, Cristescu M E A. Comparative phylogeography of marine cladocerans[J]. Marine Biology, 2008, 155(1): 1−10. doi: 10.1007/s00227-008-0996-x
|
[43] |
Radulovici A E, Sainte-marie B, Dufresne F. DNA barcoding of marine crustaceans from the estuary and gulf of St Lawrence: a regional-scale approach[J]. Molecular Ecology Resources, 2009, 9(S1): 181−187.
|
[44] |
Marlétaz F, Le Parco Y, Liu Shenglin, et al. Extreme mitogenomic variation in natural populations of chaetognaths[J]. Genome Biology and Evolution, 2017, 9(6): 1374−1384. doi: 10.1093/gbe/evx090
|
[45] |
Hubert N, Meyer C P, Bruggemann H J, et al. Cryptic diversity in indo-pacific coral-reef fishes revealed by DNA-barcoding provides new support to the Centre-of-overlap hypothesis[J]. PLoS One, 2012, 7(3): e28987. doi: 10.1371/journal.pone.0028987
|