Molecular Phylogenetic of <i>Oithona</i> based on COⅠ sequence

Wang Xingxia; Xu Lei; Wang Lianggen; Chen Xiao; Zheng Yuanyuan; Wang Xuehui; Du Feiyan

doi:10.3969/j.issn.0253-4193.2018.06.009

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Wang Xingxia, Xu Lei, Wang Lianggen, Chen Xiao, Zheng Yuanyuan, Wang Xuehui, Du Feiyan. Molecular Phylogenetic of Oithona based on COⅠ sequence[J]. Haiyang Xuebao, 2018, 40(6): 92-103. doi: 10.3969/j.issn.0253-4193.2018.06.009

Citation:

Wang Xingxia, Xu Lei, Wang Lianggen, Chen Xiao, Zheng Yuanyuan, Wang Xuehui, Du Feiyan. Molecular Phylogenetic of Oithona based on COⅠ sequence[J]. Haiyang Xuebao, 2018, 40(6): 92-103. doi: 10.3969/j.issn.0253-4193.2018.06.009

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Molecular Phylogenetic of Oithona based on COⅠ sequence

doi: 10.3969/j.issn.0253-4193.2018.06.009

1.
South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Guangzhou 510300, China;College of Marine Sciences, Shanghai Ocean University, Shanghai 201306, China
2.
South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Guangzhou 510300, China;Guangdong Provincial Key Laboratory of Fishery Ecology and Environment, Guangzhou 510300, China;Key Laboratory of South China Sea Fishery Resources Exploitation & Utilization, Ministry of Agriculture, Guangzhou 510300, China
3.
College of Marine Sciences, South China Agricultural University, Guangzhou 510642, China
4.
South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Guangzhou 510300, China;Department of Biology, College of Science, Shantou University, Shantou 515063, China

Received Date: 2017-10-22
Rev Recd Date: 2018-01-08

Abstract

Abstract

The genus Oithona is one of small size cyclopoid copepods which widely distributed and occurs in all kinds of marine environments (estuarine, coastal and oceanic waters). However, routine identification of the species has remained challenging due to the small body size and subtle morphological differences among them. We started with a survey of species diversity in the genus Oithona in the South China Sea using a morphological approach, then obtained sequences from mitochondrial COⅠ gene from several individuals of different species, performed tests on DNA taxonomy (ABGD and GMYC) and built a phylogenetic tree with the same gene sequence data download from DNA database. The results of delimitation using ABGD and GMYC model were consistent with morphological approach. The genetic distance within species was 0.0%-1.6% while 17.7%-44.5% between species. Both Bayes and Maximum Likelihood phylogenetic tree showed that each species was clustered together as a monophyletic group. O.simplex first separated from others species indicated pioneer speciation in Oithona. Two cryptic species were found in O.similis and O.plumifera, which were from the South China Sea and Mediterranean, Korea Strait and North Sea, respectively the genetic distance reached to 18.6% and 22.9%.
- Phylogenetic,
- Oithona,
- COⅠ gene,
- DNA taxonomy

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References(47)

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