Molecular phylogenetic relationships of <em>Pomadasys</em> fishes based on partial S7 ribosomal protein gene sequences

LIANG Rishen; ZHUO Xiaolei; LONG Minming; HUANG Guiju; YU Dahui; ZOU Jixing

doi:10.3969/j.issn.0253-4193.2013.01.019

Article Contents

Article Navigation > Haiyang Xuebao > 2013 > 35(1): 165-171

LIANG Rishen, ZHUO Xiaolei, LONG Minming, HUANG Guiju, YU Dahui, ZOU Jixing. Molecular phylogenetic relationships of Pomadasys fishes based on partial S7 ribosomal protein gene sequences[J]. Haiyang Xuebao, 2013, 35(1): 165-171. doi: 10.3969/j.issn.0253-4193.2013.01.019

Citation:

LIANG Rishen, ZHUO Xiaolei, LONG Minming, HUANG Guiju, YU Dahui, ZOU Jixing. Molecular phylogenetic relationships of Pomadasys fishes based on partial S7 ribosomal protein gene sequences[J]. Haiyang Xuebao, 2013, 35(1): 165-171. doi: 10.3969/j.issn.0253-4193.2013.01.019

Citation:

PDF( 1342 KB)

Molecular phylogenetic relationships of Pomadasys fishes based on partial S7 ribosomal protein gene sequences

doi: 10.3969/j.issn.0253-4193.2013.01.019

1.
College of Animal Science, South China Agricultural University, Guangzhou 510642, China
2.
South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Guangzhou 510300, China

Received Date: 2011-12-09
Rev Recd Date: 2012-09-26

Abstract

Abstract

Molecular phylogenetic relationships of 21 species including 11 Pomadasys and 10 other Haemulinae species collected from the water regions of China,America and Africa were analyzed using partial sequences of the 1st intron of S7 ribosomal protein gene. The phylogenetic trees were constructed using a methed of maximum parsimony and Bayesian inference. The result revealed that Pomadasys groups were non-monophyletic. Apart from a small group formed by six Pomadasys species,other Pomadasys were grouped in different positions of the phylogenetic trees. Pomadasys corvinaeformis was clustered with Conodon nobilis and Pomadasys macracanthus was clustered with Anisotremus species,Pomadasys stridens and Pomadasys striatum were closely related with Haemulon. Pomadasys peroteti was first separated and rooted on the basis of the Haemulinae clade. Such phylogenetic relationships were found to be correlated with their geographic distributions.
- Haemulinae,
- Pomadasys,
- phylogeny,
- S7 ribosomal protein gene

FullText(HTML)

References(34)

References

陈兴强,张建生.石鲈科鱼类苗种繁育和良种选育技术[J].海洋与渔业,2011(1): 47-48.

叶金聪.断斑石鲈(Pomadasy hasta)网箱养殖技术研究[J]. 福建水产,2007(1): 51-54.

Johnson G D. The limits and relationships of the Lutjanidae and associated families[M].Bulletin of Scripps Institution of Oceanography,1980,24: 1-111.

Nelson J S. Fishes of the World [M]. New York:John Wiley&Sons INC,1994: 360-361.

Froese R,Pauly D. FishBase. World Wide Web Electronic Publication www.fishbase.org,version (08/2011). 2011.

成庆泰,郑葆珊.中国鱼类系统检索[M].北京:科学出版社,1987:339-341.

沈世杰.台湾鱼类志[M].台北:台湾大学动物学系出版,1993:360-363.

孟庆闻,苏锦祥,缪学祖.鱼类分类学[M].北京:中国农业出版社,1995:636-640,696-700,711-713.

朱世华,郑文娟,邹记兴,等.5种石鲈科鱼类细胞色素b基因序列及分子系统分析[J].热带海洋学报,2006,25(4): 42-45.

任岗,章群,钱开诚,等.12种石鲈科鱼类线粒体16S rRNA基因的部分序列分析[J]. 热带海洋学报,2007,26(3): 48-52.

任岗,章群.石鲈科鱼类的系统发育分析兼论髭鲷属的分类地位[J].动物分类学报,2007,32(4): 835-841.

梁日深,杨国华,罗大极,等. 基于S7核糖体蛋白基因部分序列的10种石鲈科鱼类的系统发育关系[J].热带海洋学报,2010,29(5):98-102.

王宁,陈润生.基于内含子和外显子的系统发育分析的比较[J].科学通报,1999,44: 2095-2102.

Schelly R,Salzburger W. Phylogenetic relationships of the lamprologine cichlid genus Lepidiolamprologus (Teleostei:Perciformes) based on mitochondrial and nuclear sequences,suggesting introgressive hybridization [J]. Mol Phylogenet Evol,2006,38: 426-438.

Bernardi G,Alva-Campbell Y R,Gasparini J L,et al. Molecular ecology,speciation,and evolution of the reef fish genus Anisotremus[J]. Mol Phylogenet Evol,2008,48: 929-935.

Near T J,Cheng C-H C. Phylogenetics of notothenioid fishes (Teleostei: Acanthomorpha): Inferences from mitochondrial and nuclear gene sequences [J]. Mol Phylogenet Evol,2008,47: 832-840.

Piller K R,Bart JR H L,Hurley D L. Phylogeography of the greenside darter complex,Etheostoma blennioides (Teleostomi: Percidae): A wide-ranging polytypic taxon[J]. Mol Phylogenet Evol,2008,46: 974-985.

Lopez-Fernandez H,Winemiller K O,Honeycutt R L. Multilocus phylogeny and rapid radiations in Neotropical cichlid fishes(Perciformes: Cichlidae: Cichlinae)[J]. Mol Phylogenet Evol,2010,55: 1070-1086.

Levy A,Wirtz P,Floeter S R,et al. The Lusitania Province as a center of diversification: The phylogeny of the genus Microlipophrys (Pisces: Blenniidae)[J]. Mol Phylogenet Evol. 2011,58: 409-413.

王绪桢,何舜平,陈宜瑜. S7核糖体蛋白基因序列变异及其在低等鲤科鱼类中的系统发育意义[J].科学通报,2002,47(14): 1089-1094.

宋林,肖永双,高天翔.S7核糖体蛋白基因片段序列变异与花鲈属鱼类系统发育研究[J].海洋湖沼通报,2008,(2):152-158.

Sambrook J,Fritsch E F,Maniatis T. Molecular Cloning: A Laboratory Manual (3ed) [M]. New York:Cold Spring Harbor Laboratory Press,2001:138-153.

Chow S,Hazama K. Universal PCR primers for S7 ribosomal protein gene introns in fish [J]. Mol Ecol,1987,7:1255-1256.

Thompson J D,Higgins D G,Gibson T J. Clusial W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting,position specific gap penalties and weight matrix choice [J]. Nucleic Acids Res,1994,22(22): 4673-4680.

Tamura K,Dudley J,Nei M,et al. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0 [J]. Mol Biol Evol,2007,24:1596-1599.

Huelsenebck J P,Ronquist F. MrBayes: Bayesian inference of Phylogeny [J]. Bioinformatics,2001,17: 754-755.

Ronquist F,Huelsenbeck J P. MrBayes 3: Bayesian phylogenetic inference under mixed models[J]. Bioinformatics,2003,19: 1572-1574.

Knight A,Mmindell D P. Substitutions bias,weighting of DNA sequence evolution,and the phylogenetic positions of fea's viper[J]. Syst Biol,1993,42(1): 18-31.

陈晓芳,王翔,袁晓东,等.鸻形目12种鸟类线粒体细胞色素b基因序列差异及其系统发育关系[J].遗传学报,2003,30(5): 419-424.

Rocha L A,Lindeman K C,Rocha C R.Historical biogeography and speciation in the reef fish genus Haemulon (Teleostei: Haemulidae) [J]. Mol Phylogenet Evol,2008,48: 918-928.

Mckay R J. Haemulidae[M]//Fischer W,Bianchi G. FAO Species Identification Sheets for Fishery Purposes. Western Indian Ocean (Fishing Area 51). Vol. 2. FAO,Rome,1984.

Mckay R J. Haemulidae (=Pomadasyidae). Grunts (also sweetlips,rubberlips,hotlips,and velvetchins)[M]//Carpenter K E,Niem V H. The lIVING MARINE RESOURCES of the Western Central Pacific. Volume 5. Rome: FAO,2001: 2961-2989.

Minegishi Y,Aoyama J,Inoue J,et al. Molecular phylogeny and evolution of the freshwater eels genus Anguilla based on the whole mitochondrial genome sequences[J]. Mol Phylogenet Evol,2005,34(1): 134-146.

Miller T L,Cribb T H. Phylogenetic relationships of some common Indo-Pacific snappers (Perciformes: Lutjanidae) based on mitochondrial DNA sequences,with comments on the taxonomic position of the Caesioninae[J]. Mol Phylogenet Evol,2007,44: 450-460.

Relative Articles

Supplements(0)

Cited By

Proportional views