一株分离自胶州湾的裸甲藻形态相似种的分子系统学研究

朱霞; 甄毓; 于志刚

一株分离自胶州湾的裸甲藻形态相似种的分子系统学研究

1.
中国海洋大学海洋生命学院, 山东青岛 266003
2.
中国海洋大学环境科学与工程学院海洋环境与生态教育部重点实验室, 山东青岛 266100
3.
中国海洋大学化学化工学院海洋化学理论与工程技术教育部重点实验室, 山东青岛 266100

基金项目: 国家自然科学基金项目(40706044);青岛市科技计划基础研究项目(09-1-3-14-jch)。

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出版历程
- 收稿日期: 2010-02-05

Molecular phylogenetic analysis of a Gymnodinium-like species isolated from the Jiaozhou Bay of Shandong Province, China

1.
College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China
2.
Key Laboratory of Ministry of Education for Marine Environment and Ecology, College of Environmental Science and Engineering, Ocean University of China, Qingdao 266100 China
3.
Key Laboratory of Ministry of Education for Marine Chemistry Theory and Technology, College of Chemistry and Chemical Engineering, Ocean University of China, Qingdao 266100, China

摘要

摘要: 对一株分离自胶州湾的裸甲藻形态相似种(Gymnodinium sp. ZX)进行了分子水平的分类鉴定。提取基因组DNA后扩增核糖体小亚基和转录间隔区序列,经纯化、克隆并测序。将获得的序列分别进行Blastn同源性分析,并下载相关序列构建系统进化树,结果表明,该藻与共生藻(Symbiodinium)亲缘关系较近,而与裸甲藻(Gymnodinium)等其他甲藻亲缘关系较远,因此初步鉴定该藻为一种共生藻。用核糖体小亚基和转录间隔区序列分别对共生藻属构建系统进化树,分析各类群之间的关系,初步鉴定本藻属于共生藻属E类群。该藻分离自胶州湾,在f/2培养液中生长良好,表明胶州湾可能存在营自由生活的共生藻。
- 核糖体DNA(rDNA) /
- 转录间隔区 /
- 裸甲藻 /
- 共生藻
Abstract: A strain of microalgae that was isolated from the Jiaozhou Bay and primarily identified as Gymnodinium-like based on the morphological features (named as Gymnodinium sp. ZX) was further distinguished with molecular phylogenetic methods. After the processes of DNA extraction, amplification and purification, the nuclear-encoded small subunit ribosomal DNA (SSU rDNA) and internal transcribed spacer (ITS) regions were cloned and sequenced. Sequences homologous to SSU rDNA and ITS regions of Gymnodinium sp. ZX were searched with Blastn from the GenBank. The phylogenetic trees were reconstructed with the neighbor-joining (NJ) method. The results show that Gymnodinium sp. ZX has a close genetic relationship with Symbiodinium rather than Gymnodinium. Therefore, Gymnodinium sp. ZX was judged as a strain of Symbiodinium sp. Then the phylogenetic trees were reconstructed based on the SSU rDNA and ITS sequences of genus Symbiodinium respectively, the relationship among the various clades was analyzed, and Gymnodinium sp. ZX belonged to clade E. The Gymnodinium sp. ZX was isolated from the Jiaozhou Bay, and grew well in the f/2 medium, therefore, it was inferred that the free-living species of genus Symbiodinium probably existed in the Jiaozhou Bay.
- rDNA /
- ITS /
- Gymnodinium /
- Symbiodinium

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