胶州湾浮游植物遗传多样性及其季节变化研究

刘永健; 杨官品; 管晓菁; 门荣新

胶州湾浮游植物遗传多样性及其季节变化研究

中国海洋大学, 海洋生命学院, 山东青岛 266003

基金项目: 国家自然科学基金资助项目(40176028).

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出版历程
- 收稿日期: 2004-09-22
- 修回日期: 2005-03-17

Study on the genetic diversity and its seasonal variation of phytoplankton in the Jiaozhou Bay

College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China

摘要

摘要: 分别于春、夏、秋三季提取了胶州湾浮游生物总DNA,用PCR方法扩增了浮游植物核酮糖1,5-二磷酸羧化/氧化酶大亚基(rbcL)基因片段,构建了三季节rbcL基因片段质粒文库.随机从各文库中选择约50个克隆,测定了这些克隆的序列.以氨基酸序列相同为标准,共获得59个分类操作单元(OTUs),其中春季特有的21个,夏季特有的13个,秋季特有的23个.有两个OTUs为春、夏季表层海水共有.基于OTU丰度计算的香农氏指数能反映遗传多样性水平.胶州湾春、夏、秋三季的香农氏指数分别为2.69,2.44和2.76,表明秋季胶州湾浮游植物遗传多样性最丰富.春、夏、秋三季浮游植物群落组成差异显著.除夏秋季有两个OTUs相同外,其他OTUs在季节间完全不同.表层海水浮游植物群落结构是动态的,随时间、空间的不同而变化.
- 浮游植物 /
- 核酮糖1,5-二磷酸羧化/氧化酶大亚基基因 /
- 群落结构 /
- 季节变化
Abstract: Ribulose-1,5-bispho sphate carboxynase/oxygenase large subunit gene(rbcL) of phytoplankton DNAs of Jiao zhou Bay surface seawater was amplified in spring,summer and autumn and cloned respectively.One hundred and forty five clones about 50 each library were randomly selected and sequenced.Ifidentical aminoacid sequences are considered as the same operational taxonomy unit(OTU),59 OTUs are identified according to inferred amino acid sequences.Among these OTUs,21 are specific for spring seawater,13 are specific for summer seawater and 23 are specific for autumn seawater.Two OTUs are shared by summer and autumn.Shannon's index calculated from OTU abundances reflects the genetic diversity level of a community.The indexes of spring,summer and autumn surface seawater phytoplankt on are 2.69,2.44 and 2.76 respectively,indicating that phyt oplankt on genetic diversity of autumn seawater is the richest.Seasonal variation of phy to plankt on community is significant;the community compositions of three seasons are almost completely dif ferent except for two OTUs shared by summer and autumn.Surface seawater phytoplankton communities are possibly metacomm unities different spatially and temporally.
- phyt oplankt on /
- ribulose-1,5-bisphosphate carboxynase/oxyg enase large subunit gene(rbcL) /
- community structure /
- seasonal variation

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参考文献(24)

ELLIS R J.The most abundant protein in the word [J].Trends Biochem Sci,1979,4(1):241-244.

KITANO K,MAEDA N,FUKUI T,et al.Crystal structure of a novel-type archaeal RubisCo with pentagonal symmetry [J].Structure,2001,9(6):473-481.

CLEGG M T.Chloroplast gene sequences and the study of plant evolution [J].Proc Natl Acad Sci USA,1993,90(2):363-367.

ANDERSEN R A,BAILEY J C.Phylogenetic analysis of 32 strains of Vaucheria (Xanthophyceae) using the rbcL gene and ITS two flanking space regions [J].J Phycol,2002,38(3):583-592.

DAUGBJERG N,ANDERSEN R A.A molecule phylogeny of the Heterokont algae based on analysis of chloroplast-encoded rbcL sequences data[J].J Phycol,1997,33(6):1 031-1 041.

DAUGBJERG N,HENRIKSEN P.Pigment composition and rbcL sequence data from the silicoflagellate dictyocha speculum:a herterokont algae with pigments similar to some haptophytes [J].J Phycol,2001,37(6):1 110-1 120.

FRESHWATER D W,FRENDERICQ S,BUTLER B S,et al.A gene phylogeny of the red algae (Rhodophyta) based on plastid rbcl.[J].Proc Natl Acad Sci USA,1994,91(15):7 281-7 285.

FRESHWATER D W,FRENDERICQ S,HOMMERSAND M H.A molecular phylogeny of the Gelidiales(Rhodophyta) based on analysis of plastid rbcL nucleotide sequences [J].J.Phycol,1995,31(4):616-632.

FUJIWARA S,TSUZUKI M,KAWACHI M,et al.Molecular phylogeny of the Haptophyta based on the rbcL gene and sequence variation in the spacer region of the RubisCo operon [J].J Phycol,2001,37(1):121-129.

LEE S R,OAK J H,SUH Y,et al.Phylogenetic utility of rbcL sequences:an example from Antithamnion and related genera (Ceramlaceae,Rhodophyta) [J].J Phycol,2001,37(6):1 083-1 090.

MCCOURT R M,KAROL K G,BELL J,et al.Phylogeny of the conjugating green algae (Zygnemophyceae) based on rbcL sequences[J].J Phycol,2000,36(4):747-758.

WYMAN M,DAVIES J T,CRAWFORD D W,et al.Molecular and physiological responses of two classes of marine chromophytic phytoplankton (Diatoms and Prymnesiophytes) during the development of nutrient-stimulated blooms [J].Appl Environ Microbiol,2000,66(6):2 349-2 357.

ELSAIED H,NAGANUMA T.Phylogenetic diversity of ribulose-1,5-bisphosphate carboxylase/ oxygenase large-subunit genes from deep-sea microorganisms[J].Appl Environ Microbiol,2001,67(4):1 751-1 765.

PICHARD S L,CAMPBELL L,CARDER L,et al.Analysis of ribulose bisphosphate carboxylase gene expression in natural phytoplankton communities by group-specific gene probing[J].Mar Ecol Prog Ser,1997,149:239-253.

TABITA F R.The biochemistry and metabolic regulation of carbon metabolism and CO₂ fixation in purple bacteria,BLANKENSHIP R E,MADIGAN M T,BAUER C E.Anoxygenic Photosynthetic Bacteria.Dordrecht:Kluwer Acdemic Publishers,1995.885-914.

WATSON G M F,TABITA F R.Microbial ribulose 1,5-bisphosphate carboxylase/oxygenase:a molecule for phylogenetic and enzymological investigation [J].FEMS Microbiol Lett,1977,146(1):13-22.

ZIONGONE A,ENEVOLDSEN H O.The diversity of harmful algal blooms:a challenge for science and management [J].Ocean & Coastal Management,2000,43(8-9):725-748.

MACKEY D J,HIGGINS H W,MACKEY M D,et al.CHEMTA-a program for estimating class abundances form chemical markers:application to HPLC measurements of phytoplankton [J].Marine Ecology Progress Series,1996,144:265-283.

MACKEY D J,HIGGINS H W,MACKEY M D,et al.Algae class abundances in the western equatorial Pacific estimation form HPLC pigments using CHEMTAX [J].Deep-Sea Research,1998,45(9):1 441-1 468.

FURUYA K,HAYASHI M,YASUSHI Y,et al.Phytoplankton dynamics in the East China Sea in spring and summer as revealed by HPLC-derived pigment signatures [J].Deep-Sea Research,2003,50(3):367-387.

XU H H,TABITA F R.Ribulose - 1,5-bisphosphate carboxylase/oxygenase gene expression and diversity of Lake Erie planktonic microorganism [J].Appl Environ Microbiol,1996,62(6):1 913-1 921.

刘瑞玉.胶州湾生态学和生物资源[M].北京:科学出版社,1992.

POLEN-FULLER M.A two-hour method for extraction of DNA from seaweeds[J].Phycological Newsletter,1991,23:2.

DAUGBJERG N,ANDERSEN R A.Phylogenetic analysis of the rbcL sequences form Haptophytes and Heterokont algae suggest their chloroplasts are unrelated[J].Mol Biol Evol,1997,14(12):1 242-1 251.

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